Citation

Gabriel VA, McClellan EA, Scheuermann RH. Burns 2014; 40(7): 1338-1344.

Affiliation

Division of Informatics, J. Craig Venter Institute, San Diego, CA, USA. Electronic address: rscheuermann@jcvi.org.

Copyright

(Copyright © 2014, Elsevier Publishing)

DOI

10.1016/j.burns.2014.01.005

PMID

24582755

Abstract

This study was undertaken to investigate changes in RNA expression in previously healthy adult human skin following thermal injury induced by contact with hot metal that was undertaken as part of esthetic scarification, a body modification practice. Subjects were recruited to have pre-injury skin and serial wound biopsies performed. 4mm punch biopsies were taken prior to branding and 1h, 1 week, and 1, 2 and 3 months after injury. RNA was extracted and quality assured prior to the use of a whole-genome based bead array platform to describe expression changes in the samples using the pre-injury skin as a comparator. Analysis of the array data was performed using k-means clustering and a hypergeometric probability distribution without replacement and corrections for multiple comparisons were done. Confirmatory q-PCR was performed. Using a k of 10, several clusters of genes were shown to co-cluster together based on Gene Ontology classification with probabilities unlikely to occur by chance alone. OF particular interest were clusters relating to cell cycle, proteinaceous extracellular matrix and keratinization. Given the consistent expression changes at 1 week following injury in the cell cycle cluster, there is an opportunity to intervene early following burn injury to influence scar development.

Language: en